KYG_15425 protein (Nocardioides sp. SLBN35) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KYG_15425

P-type conjugative transfer ATPase TrbB; COG4962 Flp pilus assembly protein, ATPase CpaF. (351 aa)

Predicted Functional Partners:

KYG_15430

0.993

KYG_15445

0.993

KYG_15435

0.992

KYG_15450

0.992

KYG_15440

0.991

KYG_15455

0.990

KYG_15460

0.989

KYG_15465

0.989

KYG_15420

0.961

KYG_15415

0.960

Your Current Organism:

Nocardioides sp. SLBN35

NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
KYG_15415	KYG_15420	Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components.	CopG/DNA-binding domain-containing protein.	0.955
KYG_15415	KYG_15425	Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components.	P-type conjugative transfer ATPase TrbB; COG4962 Flp pilus assembly protein, ATPase CpaF.	0.960
KYG_15415	KYG_15430	Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components.	Conjugal transfer protein TrbC; COG3838 Type IV secretory pathway, VirB2 components (pilins).	0.961
KYG_15415	KYG_15435	Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components.	Conjugal transfer protein TrbD; COG5268 Type IV secretory pathway, TrbD component.	0.955
KYG_15415	KYG_15440	Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components.	Conjugal transfer ATPase TrbE; COG3451 Type IV secretory pathway, VirB4 components.	0.948
KYG_15415	KYG_15445	Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components.	COG5314 Conjugal transfer/entry exclusion protein.	0.952
KYG_15415	KYG_15450	Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components.	Conjugal transfer protein TrbL; COG3846 Type IV secretory pathway, TrbL components.	0.949
KYG_15415	KYG_15455	Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components.	Conjugal transfer protein TrbF; COG3701 Type IV secretory pathway, TrbF components.	0.937
KYG_15415	KYG_15460	Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components.	P-type conjugative transfer protein TrbG; COG3504 Type IV secretory pathway, VirB9 components.	0.940
KYG_15415	KYG_15465	Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components.	Conjugation trbi family protein; COG2948 Type IV secretory pathway, VirB10 components.	0.963
KYG_15420	KYG_15415	CopG/DNA-binding domain-containing protein.	Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components.	0.955
KYG_15420	KYG_15425	CopG/DNA-binding domain-containing protein.	P-type conjugative transfer ATPase TrbB; COG4962 Flp pilus assembly protein, ATPase CpaF.	0.961
KYG_15420	KYG_15430	CopG/DNA-binding domain-containing protein.	Conjugal transfer protein TrbC; COG3838 Type IV secretory pathway, VirB2 components (pilins).	0.963
KYG_15420	KYG_15435	CopG/DNA-binding domain-containing protein.	Conjugal transfer protein TrbD; COG5268 Type IV secretory pathway, TrbD component.	0.963
KYG_15420	KYG_15440	CopG/DNA-binding domain-containing protein.	Conjugal transfer ATPase TrbE; COG3451 Type IV secretory pathway, VirB4 components.	0.945
KYG_15420	KYG_15445	CopG/DNA-binding domain-containing protein.	COG5314 Conjugal transfer/entry exclusion protein.	0.957
KYG_15420	KYG_15450	CopG/DNA-binding domain-containing protein.	Conjugal transfer protein TrbL; COG3846 Type IV secretory pathway, TrbL components.	0.954
KYG_15420	KYG_15455	CopG/DNA-binding domain-containing protein.	Conjugal transfer protein TrbF; COG3701 Type IV secretory pathway, TrbF components.	0.943
KYG_15420	KYG_15460	CopG/DNA-binding domain-containing protein.	P-type conjugative transfer protein TrbG; COG3504 Type IV secretory pathway, VirB9 components.	0.937
KYG_15420	KYG_15465	CopG/DNA-binding domain-containing protein.	Conjugation trbi family protein; COG2948 Type IV secretory pathway, VirB10 components.	0.937