STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_15755COG4452 Inner membrane protein involved in colicin E2 resistance. (471 aa)    
Predicted Functional Partners:
KYG_15745
COG0642 Signal transduction histidine kinase.
 
   
 0.818
KYG_15760
Hypothetical protein.
       0.773
KYG_15750
Hypothetical protein.
       0.506
KYG_13576
MmgE/PrpD family protein; COG2079 Uncharacterized protein involved in propionate catabolism.
   
    0.435
KYG_13676
COG2079 Uncharacterized protein involved in propionate catabolism.
   
    0.435
KYG_14198
MmgE/PrpD family protein; COG2079 Uncharacterized protein involved in propionate catabolism.
   
    0.435
KYG_23250
MmgE/PrpD family protein; COG2079 Uncharacterized protein involved in propionate catabolism.
   
    0.435
KYG_04050
Helix-turn-helix domain-containing protein; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
     0.421
KYG_04729
Helix-turn-helix type 11 domain-containing protein; COG2378 Predicted transcriptional regulator.
  
     0.403
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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