STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_17092Succinylglutamate desuccinylase/aspartoacylase; COG3608 Predicted deacylase. (311 aa)    
Predicted Functional Partners:
KYG_21219
Cupin 2 conserved barrel domain protein; COG1396 Predicted transcriptional regulators.
  
     0.738
KYG_06549
COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase.
    
  0.630
KYG_06554
COG0506 Proline dehydrogenase.
    
  0.630
KYG_02427
Fimbrial assembly family protein.
  
     0.577
KYG_17097
Hypothetical protein; COG2319 FOG: WD40 repeat.
       0.543
KYG_01292
GCN5-like N-acetyltransferase; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
  
  0.503
KYG_01172
Peptidase M24; COG0006 Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
    
 0.492
KYG_16557
Hypothetical protein; COG0730 Predicted permeases.
 
     0.489
KYG_01912
Hypothetical protein.
 
    0.464
KYG_19023
Hypothetical protein; COG4341 Predicted HD phosphohydrolase.
  
     0.453
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.