STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_18009Asma family protein; COG2982 Uncharacterized protein involved in outer membrane biogenesis. (718 aa)    
Predicted Functional Partners:
KYG_19896
PsiF repeat-containing protein.
  
    0.696
KYG_00997
Hypothetical protein.
   
    0.573
KYG_04614
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.503
KYG_05174
Lysylphosphatidylglycerol synthetase/UPF0104; COG0392 Predicted integral membrane protein.
 
     0.473
KYG_18014
COG0564 Pseudouridylate synthases, 23S RNA-specific.
       0.471
KYG_15780
Hypothetical protein.
  
  
 0.460
KYG_07815
Hypothetical protein.
  
     0.458
KYG_04929
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.413
KYG_16862
COG2833 Uncharacterized protein conserved in bacteria.
  
    0.412
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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