STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_18129COG0583 Transcriptional regulator. (208 aa)    
Predicted Functional Partners:
KYG_18124
Helix-turn-helix domain-containing protein; COG1396 Predicted transcriptional regulators.
 
     0.887
KYG_18119
Relaxase; COG3481 Predicted HD-superfamily hydrolase.
  
     0.770
KYG_15190
Hypothetical protein.
  
     0.726
KYG_18134
COG0582 Integrase; Belongs to the 'phage' integrase family.
  
     0.669
KYG_15470
Hypothetical protein; COG5639 Uncharacterized conserved small protein.
  
     0.665
KYG_15135
Phage integrase family protein; COG0582 Integrase; Belongs to the 'phage' integrase family.
  
     0.654
KYG_18109
Hypothetical protein.
  
     0.596
KYG_15210
Regulator of plasmid copy number.
  
     0.592
KYG_15170
Hypothetical protein.
  
     0.568
KYG_15215
Hypothetical protein.
  
     0.549
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.