STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_19331COG2188 Transcriptional regulators. (132 aa)    
Predicted Functional Partners:
KYG_11165
COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit.
    
  0.644
KYG_11170
COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
    
  0.644
KYG_08945
COG3171 Uncharacterized protein conserved in bacteria.
  
     0.492
KYG_12784
Cytidyltransferase-like protein; COG1056 Nicotinamide mononucleotide adenylyltransferase.
   
  
 0.457
KYG_16912
Cupin 2 domain-containing protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
    0.446
KYG_21219
Cupin 2 conserved barrel domain protein; COG1396 Predicted transcriptional regulators.
  
    0.446
KYG_04100
Hypothetical protein.
  
     0.445
KYG_13436
Phage integrase family protein; COG0582 Integrase.
  
     0.416
KYG_19316
COG3081 Nucleoid-associated protein.
  
     0.416
KYG_23850
Recombinase; COG1961 Site-specific recombinases, DNA invertase Pin homologs.
  
     0.411
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.