STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_19706N-terminal methylation site; COG4970 Tfp pilus assembly protein FimT. (166 aa)    
Predicted Functional Partners:
KYG_19711
COG4967 Tfp pilus assembly protein PilV.
 
  
 0.962
KYG_19701
Putative type 4 fimbrial biogenesis transmembrane protein; COG4968 Tfp pilus assembly protein PilE.
 
  
 0.956
KYG_19716
Type 4 fimbrial biogenesis PilW-related protein transmembrane.
 
  
 0.889
KYG_19726
Putative type 4 fimbrial biogenesis pily1-related protein signal peptide; COG3419 Tfp pilus assembly protein, tip-associated adhesin PilY1.
 
  
 0.877
KYG_18421
Fimbrial protein pilin; COG4968 Tfp pilus assembly protein PilE.
 
  
 0.805
KYG_18426
PilC domain-containing protein; COG3419 Tfp pilus assembly protein, tip-associated adhesin PilY1.
 
  
 0.789
KYG_18441
COG4967 Tfp pilus assembly protein PilV.
 
  
 0.780
KYG_12664
COG3168 Tfp pilus assembly protein PilP.
  
  
 0.773
KYG_12674
COG3166 Tfp pilus assembly protein PilN.
 
  
 0.767
KYG_12679
COG4972 Tfp pilus assembly protein, ATPase PilM.
 
   
 0.761
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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