STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_21739COG3215 Tfp pilus assembly protein PilZ. (119 aa)    
Predicted Functional Partners:
KYG_16005
COG2202 FOG: PAS/PAC domain.
   
  0.941
KYG_11649
PAS/PAC sensor-containing diguanylate cyclase; COG2199 FOG: GGDEF domain.
    
   0.928
KYG_11659
Diguanylate cyclase/phosphodiesterase; COG2200 FOG: EAL domain.
    
   0.928
KYG_15290
PAS/PAC sensor-containing diguanylate cyclase; COG2199 FOG: GGDEF domain.
    
   0.928
KYG_20103
Hypothetical protein; COG2199 FOG: GGDEF domain.
    
   0.928
KYG_20625
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
    
   0.928
KYG_06154
COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
   
  0.890
KYG_21744
DNA-directed DNA polymerase; COG0470 ATPase involved in DNA replication.
     
 0.856
KYG_12664
COG3168 Tfp pilus assembly protein PilP.
  
   
 0.816
KYG_12669
COG3167 Tfp pilus assembly protein PilO.
  
   
 0.816
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.