STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_21856Istb domain protein ATP-binding protein; COG1484 DNA replication protein. (263 aa)    
Predicted Functional Partners:
KYG_21851
Integrase catalytic subunit; COG4584 Transposase and inactivated derivatives.
 
  
 0.950
KYG_05979
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.887
KYG_01552
Integrase catalytic subunit; COG4584 Transposase and inactivated derivatives.
  
 0.790
KYG_02612
Integrase catalytic subunit; COG4584 Transposase and inactivated derivatives.
  
 0.790
KYG_20218
COG4584 Transposase and inactivated derivatives.
  
 0.790
KYG_19943
Primase; COG3378 Predicted ATPase.
  
 
 0.784
KYG_01557
Integrase catalytic subunit; COG4584 Transposase and inactivated derivatives.
 
  
 0.783
KYG_16190
COG4584 Transposase and inactivated derivatives.
 
  
 0.783
KYG_21861
COG4644 Transposase and inactivated derivatives, TnpA family.
       0.542
KYG_21846
Transposase, IS4 family protein.
       0.497
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.