STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_22336HipA domain-containing protein; COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. (447 aa)    
Predicted Functional Partners:
KYG_22331
Helix-turn-helix domain-containing protein; COG1396 Predicted transcriptional regulators.
   
 
 0.903
KYG_03114
Hypothetical protein; COG1396 Predicted transcriptional regulators.
   
 
 0.554
KYG_11320
Hypothetical protein; COG1396 Predicted transcriptional regulators.
   
 
 0.554
KYG_18124
Helix-turn-helix domain-containing protein; COG1396 Predicted transcriptional regulators.
   
 
 0.554
KYG_19933
COG1396 Predicted transcriptional regulators.
   
 
 0.554
KYG_21459
Putative adenylate/guanylate cyclase; COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
  
     0.482
KYG_04275
COG1396 Predicted transcriptional regulators.
 
   0.481
KYG_23855
DNA-binding protein; COG1396 Predicted transcriptional regulators.
 
   0.481
KYG_04849
Hypothetical protein; COG1396 Predicted transcriptional regulators.
 
 
 0.476
KYG_18851
XRE family transcriptional regulator; COG1653 ABC-type sugar transport system, periplasmic component.
  
   0.432
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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