STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_23335Uracil-DNA glycosylase superfamily protein; COG3663 G:T/U mismatch-specific DNA glycosylase. (172 aa)    
Predicted Functional Partners:
KYG_23340
Hypothetical protein; COG0421 Spermidine synthase.
 
     0.872
KYG_04220
Exodeoxyribonuclease III Xth; COG0708 Exonuclease III.
  
 
 0.758
KYG_04499
Exodeoxyribonuclease III Xth; COG0708 Exonuclease III.
  
 
 0.758
KYG_23845
Exodeoxyribonuclease III Xth; COG0708 Exonuclease III.
  
 
 0.758
KYG_23345
COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
       0.732
KYG_23330
Hypothetical protein.
       0.686
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
  
 
  0.471
KYG_23325
COG3216 Uncharacterized protein conserved in bacteria.
       0.471
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.456
KYG_23320
TatD-like deoxyribonuclease; COG0084 Mg-dependent DNase.
  
    0.449
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.