STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCI08819.1Sporulation protein%2C YlmC/YmxH family. (84 aa)    
Predicted Functional Partners:
sigE
Stage II sporulation protein GB.
 
     0.797
SCI72430.1
Stage V sporulation protein AC.
  
    0.793
sigF_1
Stage II sporulation protein AC.
 
     0.788
SCI20894.1
ATP-dependent Clp protease proteolytic subunit.
 
     0.772
SCI14915.1
Uncharacterized protein conserved in bacteria.
  
    0.763
spoIVB
SpoIVB peptidase precursor.
  
    0.763
spoIVA
Stage IV sporulation protein A.
 
     0.762
spoVT
Stage V sporulation protein T.
  
     0.760
SCI14999.1
Stage III sporulation protein AD.
  
     0.759
SCI15082.1
Stage III sporulation protein AG.
  
     0.758
Your Current Organism:
uncultured Roseburia sp.
NCBI taxonomy Id: 512314
Other names: u. Roseburia sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.