STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCI15977.1Exodeoxyribonuclease VII small subunit. (73 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease 7 large subunit.
  
 0.999
SCI16000.1
Farnesyl diphosphate synthase.
  
  
 0.930
nusB
N utilization substance protein B homolog.
  
  
 0.868
dxs_1
1-deoxy-D-xylulose-5-phosphate synthase.
     
 0.818
recN
Recombination protein N.
     
 0.683
tlyA
16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA.
  
    0.681
SCI93846.1
Protein required for the initiation of cell division.
 
    0.681
ppnK
Probable inorganic polyphosphate/ATP-NAD kinase.
       0.660
argR
Arginine hydroxamate resistance protein.
       0.652
hemC
Porphobilinogen deaminase.
   
    0.635
Your Current Organism:
uncultured Roseburia sp.
NCBI taxonomy Id: 512314
Other names: u. Roseburia sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.