STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCI18473.1Uncharacterized conserved protein. (286 aa)    
Predicted Functional Partners:
SCI14132.1
Cupin domain.
 
    0.773
atoD
Acetate CoA-transferase subunit alpha.
    
 0.765
SCI14230.1
Arylformamidase.
 
    0.758
SCI18440.1
methylmalonyl-CoA epimerase.
       0.757
tktB_1
Transketolase 2.
       0.727
dxs_2
1-deoxy-D-xylulose-5-phosphate synthase.
       0.727
gno_3
Gluconate 5-dehydrogenase.
  
 
  0.714
SCI67083.1
Arylformamidase.
 
    0.694
gldA_2
Glycerol dehydrogenase.
       0.618
gldA_1
Glycerol dehydrogenase.
       0.601
Your Current Organism:
uncultured Roseburia sp.
NCBI taxonomy Id: 512314
Other names: u. Roseburia sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.