STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gno_3Gluconate 5-dehydrogenase. (255 aa)    
Predicted Functional Partners:
lgrD
Linear gramicidin synthase subunit D.
  
 0.874
porA_3
Pyruvate synthase subunit porA.
   
 0.857
sbcD_1
Nuclease sbcCD subunit D.
    
  0.816
sbcD_2
Nuclease sbcCD subunit D.
    
  0.816
thlA_1
Acetyl-CoA acetyltransferase.
 
  0.756
paaH_2
Probable 3-hydroxybutyryl-CoA dehydrogenase.
  
  0.717
SCI18473.1
Uncharacterized conserved protein.
  
 
  0.714
accD
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta.
  
 
 0.713
fabF
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 0.710
SCI75146.1
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
  
 0.705
Your Current Organism:
uncultured Roseburia sp.
NCBI taxonomy Id: 512314
Other names: u. Roseburia sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.