STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCI30375.1Uncharacterised protein. (274 aa)    
Predicted Functional Partners:
SCI30436.1
Uncharacterised protein.
 
     0.954
SCI30409.1
Uncharacterised protein.
 
     0.949
ribBA
Riboflavin biosynthesis protein ribBA.
    
  0.833
SCI72185.1
Tetratricopeptide repeat protein.
 
     0.775
SCJ17609.1
Protein of uncharacterised function (DUF1292).
  
     0.773
SCI50031.1
Uncharacterised protein.
  
     0.772
SCI49735.1
Uncharacterised protein.
  
     0.771
SCI50002.1
Uncharacterised protein.
  
   
 0.769
SCJ32608.1
Uncharacterised protein.
  
     0.769
SCI55828.1
Preprotein translocase subunit SecE.
  
     0.768
Your Current Organism:
uncultured Roseburia sp.
NCBI taxonomy Id: 512314
Other names: u. Roseburia sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.