STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pkn1Serine/threonine-protein kinase pkn1. (483 aa)    
Predicted Functional Partners:
SCI31540.1
Uncharacterised protein.
     0.882
SCI31463.1
Flavodoxin.
 
   
0.828
SCI31514.1
4-carboxymuconolactone decarboxylase.
 
     0.809
SCI31567.1
Uncharacterized conserved protein.
      0.735
adhR_1
HTH-type transcriptional regulator AdhR.
 
     0.659
SCI31412.1
Uncharacterised protein.
 
    0.602
ribBA
Riboflavin biosynthesis protein ribBA.
  
 
 0.541
porA_3
Pyruvate synthase subunit porA.
     
 0.510
prkC_1
Serine/threonine-protein kinase PrkC.
 
 0.501
pknB
Serine/threonine-protein kinase pknB.
 
 0.468
Your Current Organism:
uncultured Roseburia sp.
NCBI taxonomy Id: 512314
Other names: u. Roseburia sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.