STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppdKPyruvate%2C phosphate dikinase. (876 aa)    
Predicted Functional Partners:
porA_3
Pyruvate synthase subunit porA.
    
 0.979
pyk
Pyruvate kinase.
    
 0.925
cfiB
2-oxoglutarate carboxylase small subunit.
  
 
 0.895
pckA
Phosphoenolpyruvate carboxykinase [ATP].
     
 0.881
ldh
L-lactate dehydrogenase.
  
 
 0.872
eno
Enolase.
    
 0.865
pgi
Glucose-6-phosphate isomerase.
    
 0.865
tal
Transaldolase.
    
 0.862
eda
Putative KHG/KDPG aldolase.
     
 0.847
lsrF
Uncharacterized aldolase lsrF.
  
 
 0.845
Your Current Organism:
uncultured Roseburia sp.
NCBI taxonomy Id: 512314
Other names: u. Roseburia sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.