STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCI42104.1Type IV secretory pathway%2C VirB4 components. (777 aa)    
Predicted Functional Partners:
SCI42079.1
PrgI family protein.
 
     0.943
SCI42049.1
Uncharacterised protein.
 
     0.936
traG_1
Conjugal transfer protein traG.
 
  
 0.895
SCI42174.1
Uncharacterised protein.
 
    0.858
SCI41855.1
Relaxase/Mobilisation nuclease domain.
 
     0.835
SCI41985.1
Uncharacterised protein.
 
     0.827
traG_3
Conjugal transfer protein traG.
 
  
 0.785
SCI41884.1
Protein of uncharacterised function (DUF3801).
 
     0.783
SCI91878.1
Type IV secretion system component VirD4.
 
  
 0.782
mboIIM
Modification methylase MboII.
       0.779
Your Current Organism:
uncultured Roseburia sp.
NCBI taxonomy Id: 512314
Other names: u. Roseburia sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.