Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCI24264.1 | bmrR_4 | SAMEA3545351_00578 | SAMEA3545351_01516 | DNA-directed RNA polymerase subunit omega. | Multidrug-efflux transporter 1 regulator. | 0.932 |
SCI24264.1 | rpoA | SAMEA3545351_00578 | SAMEA3545351_01547 | DNA-directed RNA polymerase subunit omega. | DNA-directed RNA polymerase subunit alpha. | 0.999 |
SCI24264.1 | rpoB | SAMEA3545351_00578 | SAMEA3545351_01417 | DNA-directed RNA polymerase subunit omega. | DNA-directed RNA polymerase subunit beta. | 0.999 |
SCI24264.1 | rpoC | SAMEA3545351_00578 | SAMEA3545351_01418 | DNA-directed RNA polymerase subunit omega. | DNA-directed RNA polymerase subunit beta'. | 0.999 |
SCI24264.1 | rpoD | SAMEA3545351_00578 | SAMEA3545351_01486 | DNA-directed RNA polymerase subunit omega. | RNA polymerase sigma factor rpoD. | 0.876 |
SCI24264.1 | sigA | SAMEA3545351_00578 | SAMEA3545351_02379 | DNA-directed RNA polymerase subunit omega. | Sigma-A. | 0.876 |
SCI24264.1 | sigF_2 | SAMEA3545351_00578 | SAMEA3545351_01776 | DNA-directed RNA polymerase subunit omega. | Stage II sporulation protein AC. | 0.874 |
accD | bmrR_4 | SAMEA3545351_00782 | SAMEA3545351_01516 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta. | Multidrug-efflux transporter 1 regulator. | 0.794 |
accD | rpoB | SAMEA3545351_00782 | SAMEA3545351_01417 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta. | DNA-directed RNA polymerase subunit beta. | 0.404 |
bmrR_4 | SCI24264.1 | SAMEA3545351_01516 | SAMEA3545351_00578 | Multidrug-efflux transporter 1 regulator. | DNA-directed RNA polymerase subunit omega. | 0.932 |
bmrR_4 | accD | SAMEA3545351_01516 | SAMEA3545351_00782 | Multidrug-efflux transporter 1 regulator. | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta. | 0.794 |
bmrR_4 | dnaJ_1 | SAMEA3545351_01516 | SAMEA3545351_02372 | Multidrug-efflux transporter 1 regulator. | Chaperone protein DnaJ. | 0.699 |
bmrR_4 | dnaJ_2 | SAMEA3545351_01516 | SAMEA3545351_02772 | Multidrug-efflux transporter 1 regulator. | Heat shock protein J. | 0.699 |
bmrR_4 | rpoA | SAMEA3545351_01516 | SAMEA3545351_01547 | Multidrug-efflux transporter 1 regulator. | DNA-directed RNA polymerase subunit alpha. | 0.933 |
bmrR_4 | rpoB | SAMEA3545351_01516 | SAMEA3545351_01417 | Multidrug-efflux transporter 1 regulator. | DNA-directed RNA polymerase subunit beta. | 0.974 |
bmrR_4 | rpoC | SAMEA3545351_01516 | SAMEA3545351_01418 | Multidrug-efflux transporter 1 regulator. | DNA-directed RNA polymerase subunit beta'. | 0.932 |
bmrR_4 | rpoD | SAMEA3545351_01516 | SAMEA3545351_01486 | Multidrug-efflux transporter 1 regulator. | RNA polymerase sigma factor rpoD. | 0.850 |
bmrR_4 | sigA | SAMEA3545351_01516 | SAMEA3545351_02379 | Multidrug-efflux transporter 1 regulator. | Sigma-A. | 0.850 |
bmrR_4 | sigF_2 | SAMEA3545351_01516 | SAMEA3545351_01776 | Multidrug-efflux transporter 1 regulator. | Stage II sporulation protein AC. | 0.850 |
dnaJ_1 | bmrR_4 | SAMEA3545351_02372 | SAMEA3545351_01516 | Chaperone protein DnaJ. | Multidrug-efflux transporter 1 regulator. | 0.699 |
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