STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsD30S ribosomal protein S4. (197 aa)    
Predicted Functional Partners:
rpsO
30S ribosomal protein S15.
  
 0.999
SCI26136.1
Ribosomal protein L30E.
  
 0.999
rpsB
Vegetative protein 209.
 
 0.999
rpsL
30S ribosomal protein S12.
 
 0.999
rpsG
30S ribosomal protein S7.
 
 0.999
rpsJ
BS13.
 
 0.999
rplD
50S ribosomal protein L4.
 
 0.999
rpsS
BS17.
 
 0.999
rpsC
BS2.
 
 0.999
rpsQ
30S ribosomal protein S17.
 
 0.999
Your Current Organism:
uncultured Roseburia sp.
NCBI taxonomy Id: 512314
Other names: u. Roseburia sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.