STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCJ00008.1Uncharacterised protein. (96 aa)    
Predicted Functional Partners:
SCI99975.1
Uncharacterised protein.
       0.779
SCJ00039.1
Uncharacterised protein.
       0.468
SCJ00069.1
Gliding-associated putative ABC transporter substrate-binding component GldG.
       0.468
SCJ00098.1
ABC-type transport system involved in multi-copper enzyme maturation%2C permease component.
       0.468
ybhF_4
Uncharacterized ABC transporter ATP-binding protein YbhF.
       0.468
bdhA_3
NADH-dependent butanol dehydrogenase A.
       0.444
tcrY
Probable sensor histidine kinase TcrY.
       0.417
arlR_3
Response regulator ArlR.
       0.417
Your Current Organism:
uncultured Roseburia sp.
NCBI taxonomy Id: 512314
Other names: u. Roseburia sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.