STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrrKPutative Holliday junction resolvase. (142 aa)    
Predicted Functional Partners:
SCJ17669.1
Uncharacterized protein conserved in bacteria.
 
    0.966
SCJ17609.1
Protein of uncharacterised function (DUF1292).
       0.822
SCI30041.1
Uncharacterized protein conserved in bacteria.
  
    0.768
alaS
Alanine--tRNA ligase.
 
  
 0.754
miaB_2
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB.
       0.711
SCJ17540.1
protein-L-isoaspartate O-methyltransferase.
 
     0.681
miaA
tRNA dimethylallyltransferase.
  
    0.666
rnjA
Ribonuclease J 1.
       0.636
yhbU_2
Uncharacterized protease yhbU precursor.
       0.625
SCJ25271.1
Putative TrmH family tRNA/rRNA methyltransferase.
  
    0.575
Your Current Organism:
uncultured Roseburia sp.
NCBI taxonomy Id: 512314
Other names: u. Roseburia sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.