STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCJ24507.1Nitrous oxide-stimulated promoter. (116 aa)    
Predicted Functional Partners:
cydD
ATP-binding/permease protein CydD.
 
     0.954
ybaN
Inner membrane protein ybaN.
 
     0.951
SCJ24476.1
Probable ABC transporter ATP-binding protein HI_0664.
 
     0.940
coaD
Phosphopantetheine adenylyltransferase.
     
 0.755
rnhB
Ribonuclease HII.
   
    0.572
SCJ24564.1
Uncharacterised protein.
       0.476
SCI87219.1
Uncharacterised protein.
  
     0.423
SCJ24408.1
Manganese transport regulator MntR.
       0.412
Your Current Organism:
uncultured Roseburia sp.
NCBI taxonomy Id: 512314
Other names: u. Roseburia sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.