STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCJ31380.1Predicted transporter component. (354 aa)    
Predicted Functional Partners:
SCJ31348.1
Sulfur transfer protein SirA.
 
  
 0.982
SCI30650.1
Selenium metabolism protein YedF.
 
  
 0.748
cysNC
Bifunctional enzyme CysN/CysC.
   
    0.656
selB
SelB translation factor.
 
   
 0.552
cmpR_7
HTH-type transcriptional activator CmpR.
 
     0.549
csd_3
Probable cysteine desulfurase.
 
     0.539
SCJ31441.1
Protein of uncharacterised function (DUF3343).
 
     0.478
selA
L-seryl-tRNA(Sec) selenium transferase.
 
  
 0.462
Your Current Organism:
uncultured Roseburia sp.
NCBI taxonomy Id: 512314
Other names: u. Roseburia sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.