STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCT15684.1Stage V sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)    
Predicted Functional Partners:
OCT15683.1
Stage V sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.978
OCT15682.1
Stage V sporulation protein AC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.923
OCT15681.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.916
OCT12476.1
Stage V sporulation protein AF; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.833
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
     0.795
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.782
OCT12523.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.774
OCT13248.1
Stage V sporulation protein T; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.772
OCT13500.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.772
OCT17089.1
Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.772
Your Current Organism:
Paenibacillus pectinilyticus
NCBI taxonomy Id: 512399
Other names: CECT 7358, KCTC 13222, P. pectinilyticus, Paenibacillus pectinilyticus Park et al. 2009, Paenibacillus sp. RCB-08, strain RCB-08
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