STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCT11759.1D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)    
Predicted Functional Partners:
OCT17109.1
With OppABCD is involved in the transport of oligopeptides; OppF and OppD are ATP-binding proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.986
OCT11760.1
Glutathione ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 0.986
OCT16884.1
Nickel import ATP-binding protein NikD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.984
OCT17110.1
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 0.982
OCT11758.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.980
OCT16883.1
Nickel import ATP-binding protein NikE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.975
OCT11757.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.975
OCT13982.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.948
OCT16886.1
Nickel ABC transporter permease subunit NikB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.948
OCT12105.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.948
Your Current Organism:
Paenibacillus pectinilyticus
NCBI taxonomy Id: 512399
Other names: CECT 7358, KCTC 13222, P. pectinilyticus, Paenibacillus pectinilyticus Park et al. 2009, Paenibacillus sp. RCB-08, strain RCB-08
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