STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCT11942.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (101 aa)    
Predicted Functional Partners:
OCT15921.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.803
OCT17199.1
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.656
OCT11943.1
Oligoendopeptidase F; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.602
OCT11911.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.576
OCT16990.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
OCT13300.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.552
OCT13182.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.552
OCT14524.1
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.552
OCT17275.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.532
OCT12339.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.513
Your Current Organism:
Paenibacillus pectinilyticus
NCBI taxonomy Id: 512399
Other names: CECT 7358, KCTC 13222, P. pectinilyticus, Paenibacillus pectinilyticus Park et al. 2009, Paenibacillus sp. RCB-08, strain RCB-08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.