STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108979502Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1134 aa)    
Predicted Functional Partners:
LOC109018735
Transcription factor PIF3-like isoform X1.
    
 0.973
LOC109000498
Transcription factor PIF3-like.
    
 0.967
LOC109007770
Transcription factor PIF3-like isoform X1.
    
 0.967
LOC108981996
Protein EARLY FLOWERING 3-like.
    
 0.946
LOC109001595
Protein EARLY FLOWERING 3.
    
 0.946
LOC109002789
Transcription factor PIF3-like.
    
 
 0.747
LOC109014204
Histone deacetylase 6.
     
 0.635
LOC108990727
Transcription factor PIF1-like isoform X1.
    
 
 0.626
LOC109006060
Transcription factor PIF1-like.
    
 
 0.626
LOC109019596
Transcription factor PIF1-like.
    
 
 0.626
Your Current Organism:
Juglans regia
NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.
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