STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108983088Phospho-2-dehydro-3-deoxyheptonate aldolase. (523 aa)    
Predicted Functional Partners:
LOC108997690
3-dehydroquinate synthase, chloroplastic-like.
  
 0.941
LOC108999582
3-dehydroquinate synthase, chloroplastic-like.
  
 0.941
LOC109015301
Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like.
   
 0.899
LOC109011054
Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like.
   
 0.897
LOC108995064
Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like isoform X1.
   
 0.882
LOC109005939
Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like isoform X1.
   
 0.882
LOC109007161
N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic-like isoform X1.
    
 
 0.871
LOC109011053
Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like.
   
 0.840
LOC109011052
Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like isoform X1.
   
 0.833
LOC109011355
Transketolase, chloroplastic.
   
 0.806
Your Current Organism:
Juglans regia
NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.
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