STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC1089872264-hydroxy-4-methyl-2-oxoglutarate aldolase; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions. (166 aa)    
Predicted Functional Partners:
LOC108991981
Malate synthase; Belongs to the malate synthase family.
   
  
 0.736
LOC108982043
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
     
 0.704
LOC108984827
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
     
 0.704
LOC109012761
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
     
 0.704
LOC108983310
Peptide methionine sulfoxide reductase A1-like.
      
 0.695
LOC108986724
Peptide methionine sulfoxide reductase-like.
      
 0.695
LOC108992059
Peptide methionine sulfoxide reductase A5.
      
 0.695
LOC108992523
Ubiquitin carboxyl-terminal hydrolase 12-like.
      
 0.695
LOC108998869
Peptide methionine sulfoxide reductase A1-like.
      
 0.695
LOC109011960
Ubiquitin carboxyl-terminal hydrolase 12-like; Belongs to the peptidase C19 family.
      
 0.695
Your Current Organism:
Juglans regia
NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.
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