STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108988456Superoxide dismutase [Fe] 3, chloroplastic. (266 aa)    
Predicted Functional Partners:
LOC109002223
Uncharacterized protein LOC109002223; Belongs to the bacterial ribosomal protein bS18 family.
   
 
 0.874
LOC109003736
Uncharacterized protein LOC109003736.
   
 
 0.870
LOC109006410
39S ribosomal protein L46, mitochondrial-like.
   
 
 0.850
LOC108980411
Uncharacterized protein LOC108980411; Belongs to the universal ribosomal protein uS5 family.
  
 
 0.835
LOC109007104
Uncharacterized protein LOC108989236.
   
 
 0.832
LOC109010669
Uncharacterized protein LOC109010669.
   
 
 0.826
LOC109002322
Uncharacterized protein LOC109002322.
  
   0.819
LOC108982786
Uncharacterized protein LOC108982786 isoform X1.
   
 
 0.811
LOC109014098
Uncharacterized protein LOC109014098 isoform X1.
  
 
 0.806
LOC109001001
30S ribosomal protein S16-2, chloroplastic/mitochondrial.
   
 
 0.803
Your Current Organism:
Juglans regia
NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.