STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108994773Pentatricopeptide repeat-containing protein At3g09650, chloroplastic. (755 aa)    
Predicted Functional Partners:
LOC108994802
Protein high chlorophyll fluorescent 107 isoform X1.
      
 0.580
LOC109009829
Small RNA 2'-O-methyltransferase isoform X1.
      
 0.519
LOC108988016
Auxin transport protein BIG.
      
 0.503
LOC108994388
Uncharacterized protein LOC108994388 isoform X1.
      
 0.472
LOC109000758
Ribonuclease E/G-like protein, chloroplastic isoform X1.
      
 0.472
LOC108987898
Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic isoform X1.
      
 0.428
LOC109005528
Pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like.
  
  
0.415
Your Current Organism:
Juglans regia
NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.