STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108999537Uncharacterized protein LOC108999537. (183 aa)    
Predicted Functional Partners:
LOC108984522
High mobility group B protein 9 isoform X1.
    
 
 0.588
LOC108985992
High mobility group B protein 10 isoform X1.
    
 
 0.588
LOC109003447
High mobility group B protein 15-like.
    
 
 0.588
LOC109022030
High mobility group B protein 15-like isoform X1.
    
 
 0.588
LOC109005230
Transcription initiation factor TFIID subunit 5.
    
  0.488
LOC108997673
Transformation/transcription domain-associated protein-like isoform X1; Belongs to the PI3/PI4-kinase family.
    
  0.481
LOC109002146
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
  0.471
LOC108984682
Transcription initiation factor TFIID subunit 6-like.
    
  0.402
LOC109012647
Transcription initiation factor TFIID subunit 6 isoform X1.
    
  0.402
LOC109005940
Chromatin structure-remodeling complex protein SYD isoform X1.
    
 0.401
Your Current Organism:
Juglans regia
NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.