STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109001249Uncharacterized protein LOC109001249 isoform X1. (826 aa)    
Predicted Functional Partners:
LOC108989531
WD-40 repeat-containing protein MSI1-like.
    
 
 0.580
LOC109009224
WD-40 repeat-containing protein MSI1.
    
 
 0.580
LOC108987963
PHD finger protein MALE MEIOCYTE DEATH 1.
    
 
 0.560
LOC109001284
PHD finger protein At1g33420-like.
    
 
 0.560
LOC109005290
PHD finger protein At1g33420.
    
 
 0.560
LOC109005539
PHD finger protein MALE STERILITY 1.
    
 
 0.560
LOC108993430
WD-40 repeat-containing protein MSI3-like.
    
 
 0.524
LOC109007921
WD-40 repeat-containing protein MSI4-like.
    
 
 0.524
LOC109009546
WD-40 repeat-containing protein MSI4-like.
    
 
 0.524
LOC108979274
Histone deacetylase 6-like.
    
 
 0.509
Your Current Organism:
Juglans regia
NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.