STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109007214Putative pentatricopeptide repeat-containing protein At5g52630. (614 aa)    
Predicted Functional Partners:
LOC109001302
Uncharacterized protein LOC109001302.
      
 0.581
LOC109014290
Glycine-rich RNA-binding protein 4, mitochondrial.
    
 
 0.497
LOC109002305
Multiple organellar RNA editing factor 1, mitochondrial.
    
 
 0.487
LOC108979952
Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic.
      
 0.412
Your Current Organism:
Juglans regia
NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.