STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109013538Protein YLS9-like. (226 aa)    
Predicted Functional Partners:
LOC108994798
Uncharacterized protein LOC108994798.
  
     0.490
LOC108985619
Uncharacterized protein LOC108985619.
  
     0.489
LOC109013218
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.461
LOC108985560
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.459
LOC109017259
Uncharacterized protein LOC109017259.
  
     0.450
LOC109021507
Uncharacterized protein LOC109021507 isoform X1.
  
     0.448
LOC108992212
Uncharacterized protein.
  
     0.434
LOC108981060
Uncharacterized protein LOC108981060.
  
     0.432
LOC108993667
Uncharacterized protein LOC108993667.
  
     0.432
LOC108999879
U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like.
  
     0.428
Your Current Organism:
Juglans regia
NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.
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