STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109021845Mannan endo-1,4-beta-mannosidase 2-like; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (215 aa)    
Predicted Functional Partners:
LOC108984522
High mobility group B protein 9 isoform X1.
    
 0.522
LOC108985992
High mobility group B protein 10 isoform X1.
    
 0.522
LOC109003447
High mobility group B protein 15-like.
    
 0.522
LOC109022030
High mobility group B protein 15-like isoform X1.
    
 0.522
LOC109005940
Chromatin structure-remodeling complex protein SYD isoform X1.
    
 0.514
LOC108996345
Serine/threonine-protein kinase ATG1t.
   
 
 0.509
LOC108982786
Uncharacterized protein LOC108982786 isoform X1.
   
  0.507
LOC109001001
30S ribosomal protein S16-2, chloroplastic/mitochondrial.
   
  0.490
LOC109014098
Uncharacterized protein LOC109014098 isoform X1.
    
  0.484
LOC108986673
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.
    
 0.477
Your Current Organism:
Juglans regia
NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.