STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109022320DEAD-box ATP-dependent RNA helicase 16. (598 aa)    
Predicted Functional Partners:
LOC108984791
Ribosome production factor 2 homolog.
   
 
 0.997
LOC109021458
Peter Pan-like protein.
   
   0.991
LOC108988899
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.987
LOC109010429
DEAD-box ATP-dependent RNA helicase 13 isoform X1.
  
 
0.985
LOC108982270
Probable rRNA-processing protein EBP2 homolog.
   
 0.984
LOC108992626
WD repeat-containing protein DDB_G0290555.
   
 
 0.983
LOC108986455
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 0.968
LOC108986870
U3 small nucleolar RNA-associated protein 14.
   
 0.968
LOC108983139
Probable U3 small nucleolar RNA-associated protein 7 isoform X1.
   
 0.966
LOC108980839
RNA-binding protein 28 isoform X1.
   
 0.964
Your Current Organism:
Juglans regia
NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.