STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdhCPyruvate dehydrogenase E2 component; Identified by match to protein family HMM PF00198; match to protein family HMM PF02817. (311 aa)    
Predicted Functional Partners:
pdhA
Pyruvate dehydrogenase E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
 
 0.999
pdhB
Pyruvate dehydrogenase E1 component, beta subunit; Identified by match to protein family HMM PF02779; match to protein family HMM PF02780.
 
 0.999
lpdA
Dihydrolipoyl dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350.
 0.999
pta
Phosphate acetyltransferase; Identified by match to protein family HMM PF01515.
  
 
 0.951
prsA
Ribose-phosphate pyrophosphokinase; Identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251.
  
 0.913
MCRO_0763
Lipoate--protein ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545.
  
 0.908
MCRO_0035
Hypothetical protein; Identified by glimmer; putative.
   
 
 0.905
MCRO_0304
Protein phosphatase.
   
 0.750
MCRO_0714
Hypothetical protein; Identified by glimmer; putative.
  
  0.565
uvrC
Excinuclease UvrABC system, nuclease subunit (UvrC); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
   
   0.543
Your Current Organism:
Mycoplasma crocodyli
NCBI taxonomy Id: 512564
Other names: M. crocodyli MP145, Mycoplasma crocodyli ATCC 51981, Mycoplasma crocodyli MP145, Mycoplasma crocodyli str. MP145, Mycoplasma crocodyli strain MP145
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