STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCRO_0597Hypothetical protein; Identified by glimmer; putative; Belongs to the sigma-70 factor family. (198 aa)    
Predicted Functional Partners:
MCRO_0598
tRNA/rRNA methylase; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.773
cysS
cysteine--tRNA ligase; Identified by match to protein family HMM PF01406; match to protein family HMM PF09334.
       0.567
MCRO_0596
Hypothetical beta-CASP family DNA/RNA hydrolase; Identified by match to protein family HMM PF00753; match to protein family HMM PF07521.
       0.517
MCRO_0600
Hypothetical protein; Identified by glimmer; putative.
       0.422
Your Current Organism:
Mycoplasma crocodyli
NCBI taxonomy Id: 512564
Other names: M. crocodyli MP145, Mycoplasma crocodyli ATCC 51981, Mycoplasma crocodyli MP145, Mycoplasma crocodyli str. MP145, Mycoplasma crocodyli strain MP145
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