Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMIS_15170 | AMIS_15180 | AMIS_15170 | AMIS_15180 | Hypothetical protein. | Putative penicillin-binding protein. | 0.943 |
AMIS_15170 | AMIS_930 | AMIS_15170 | AMIS_930 | Hypothetical protein. | Hypothetical protein. | 0.429 |
AMIS_15170 | ftsQ | AMIS_15170 | AMIS_15250 | Hypothetical protein. | Putative cell division protein FtsQ; Essential cell division protein. | 0.965 |
AMIS_15170 | ftsW | AMIS_15170 | AMIS_15220 | Hypothetical protein. | Putative cell division protein FtsW; Belongs to the SEDS family. | 0.625 |
AMIS_15170 | murC | AMIS_15170 | AMIS_15240 | Hypothetical protein. | Putative UDP-N-acetylmuramoyl-L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.432 |
AMIS_15170 | murG | AMIS_15170 | AMIS_15230 | Hypothetical protein. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.459 |
AMIS_15180 | AMIS_15170 | AMIS_15180 | AMIS_15170 | Putative penicillin-binding protein. | Hypothetical protein. | 0.943 |
AMIS_15180 | AMIS_68360 | AMIS_15180 | AMIS_68360 | Putative penicillin-binding protein. | Hypothetical protein. | 0.889 |
AMIS_15180 | AMIS_7580 | AMIS_15180 | AMIS_7580 | Putative penicillin-binding protein. | Putative septum formation initiator. | 0.488 |
AMIS_15180 | AMIS_930 | AMIS_15180 | AMIS_930 | Putative penicillin-binding protein. | Hypothetical protein. | 0.889 |
AMIS_15180 | ftsQ | AMIS_15180 | AMIS_15250 | Putative penicillin-binding protein. | Putative cell division protein FtsQ; Essential cell division protein. | 0.972 |
AMIS_15180 | ftsW | AMIS_15180 | AMIS_15220 | Putative penicillin-binding protein. | Putative cell division protein FtsW; Belongs to the SEDS family. | 0.988 |
AMIS_15180 | murC | AMIS_15180 | AMIS_15240 | Putative penicillin-binding protein. | Putative UDP-N-acetylmuramoyl-L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.939 |
AMIS_15180 | murD | AMIS_15180 | AMIS_16910 | Putative penicillin-binding protein. | Putative UDP-N-acetylmuramoylalanine-D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.915 |
AMIS_15180 | murG | AMIS_15180 | AMIS_15230 | Putative penicillin-binding protein. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.909 |
AMIS_68360 | AMIS_15180 | AMIS_68360 | AMIS_15180 | Hypothetical protein. | Putative penicillin-binding protein. | 0.889 |
AMIS_68360 | AMIS_930 | AMIS_68360 | AMIS_930 | Hypothetical protein. | Hypothetical protein. | 0.412 |
AMIS_68360 | ftsQ | AMIS_68360 | AMIS_15250 | Hypothetical protein. | Putative cell division protein FtsQ; Essential cell division protein. | 0.967 |
AMIS_68360 | ftsW | AMIS_68360 | AMIS_15220 | Hypothetical protein. | Putative cell division protein FtsW; Belongs to the SEDS family. | 0.701 |
AMIS_68360 | murD | AMIS_68360 | AMIS_16910 | Hypothetical protein. | Putative UDP-N-acetylmuramoylalanine-D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.443 |
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