Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMIS_27770Hypothetical protein. (530 aa)    
Predicted Functional Partners:
AMIS_40480
Hypothetical protein.
   
 0.669
AMIS_27760
Hypothetical protein.
       0.553
AMIS_11590
Putative DNA internalization-related competence protein.
   
 
 0.512
AMIS_49720
Hypothetical protein; Condensation domain of NRPS.
  
 
 0.486
AMIS_15710
Putative glutamate synthase large subunit.
     
 0.477
AMIS_49650
Putative NRPS.
  
 
 0.454
AMIS_18290
Putative integral membrane ATPase; Haloacid dehalogenase-like hydrolase domain.
  
  
 0.452
AMIS_32330
Putative NRPS.
  
 
 0.450
gmk
Putative guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 0.433
AMIS_58770
Putative NRPS-type-I PKS fusion protein.
  
 
 0.431
Your Current Organism:
Actinoplanes missouriensis
NCBI taxonomy Id: 512565
Other names: A. missouriensis 431, Actinoplanes missouriensis 431, Actinoplanes missouriensis str. 431, Actinoplanes missouriensis strain 431
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