STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMIS_28790Putative pectate lyase; F5/8 type C domain. (402 aa)    
Predicted Functional Partners:
AMIS_18940
Putative pectinesterase.
 
  
 0.960
AMIS_51050
Putative GDSL-like lipase/acylhydrolase with Cellulose binding domain.
 
 
 0.818
AMIS_58590
Putative pectate lyase.
   
 0.805
AMIS_43980
Putative pectate lyase.
   
 0.790
AMIS_43990
Putative pectate lyase.
   
 0.777
AMIS_43970
Putative pectate lyase.
   
 0.771
AMIS_33480
Glycosyl hydrolase family 11, Cellulose binding domain; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.756
AMIS_55080
Putative pectate lyase.
  
   
 0.743
AMIS_28340
Glycosyl hydrolase family 62, Ricin-type beta-trefoil lectin domain.
 
     0.742
AMIS_30650
Cellulose binding domain.
 
   0.736
Your Current Organism:
Actinoplanes missouriensis
NCBI taxonomy Id: 512565
Other names: A. missouriensis 431, Actinoplanes missouriensis 431, Actinoplanes missouriensis str. 431, Actinoplanes missouriensis strain 431
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.