STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMIS_29280Putative ABC transporter ATP-binding protein. (247 aa)    
Predicted Functional Partners:
AMIS_29290
Putative permease.
 
   0.912
AMIS_52340
Putative permease.
   0.869
AMIS_48700
Putative permease.
   0.846
AMIS_26170
Putative permease.
 
 
 0.829
AMIS_36140
Putative permease.
   0.815
AMIS_52480
Putative permease.
 
 
 0.814
AMIS_26120
Putative permease.
   0.686
AMIS_79500
Putative permease.
   0.659
AMIS_53180
Putative permease.
 
 
 0.641
AMIS_53750
Putative permease.
 
  
 0.639
Your Current Organism:
Actinoplanes missouriensis
NCBI taxonomy Id: 512565
Other names: A. missouriensis 431, Actinoplanes missouriensis 431, Actinoplanes missouriensis str. 431, Actinoplanes missouriensis strain 431
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.