STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMIS_38020Hypothetical protein; CTG start. (534 aa)    
Predicted Functional Partners:
AMIS_50870
Putative CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     0.945
AMIS_50920
Hypothetical protein.
 
  
 0.813
AMIS_50890
Hypothetical protein.
 
     0.800
AMIS_50910
Hypothetical protein.
 
   
 0.798
AMIS_50900
Putative glycosyltransferase.
 
   
 0.783
AMIS_50880
Putative dehydrogenase.
 
     0.781
AMIS_50930
Hypothetical protein; RibD C-terminal domain.
 
    0.754
AMIS_67870
Hypothetical protein.
  
     0.705
AMIS_58770
Putative NRPS-type-I PKS fusion protein.
     
 0.466
AMIS_17170
Hypothetical protein.
  
 
   0.453
Your Current Organism:
Actinoplanes missouriensis
NCBI taxonomy Id: 512565
Other names: A. missouriensis 431, Actinoplanes missouriensis 431, Actinoplanes missouriensis str. 431, Actinoplanes missouriensis strain 431
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