Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMIS_3400 | AMIS_47750 | AMIS_3400 | AMIS_47750 | Hypothetical protein. | Putative 5'-3' exonuclease. | 0.899 |
AMIS_3400 | AMIS_73340 | AMIS_3400 | AMIS_73340 | Hypothetical protein. | Putative ATP-dependent DNA helicase. | 0.966 |
AMIS_3400 | AMIS_76790 | AMIS_3400 | AMIS_76790 | Hypothetical protein. | Putative ATP-dependent helicase. | 0.885 |
AMIS_3400 | recA | AMIS_3400 | AMIS_69110 | Hypothetical protein. | Putative recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.876 |
AMIS_3400 | topA | AMIS_3400 | AMIS_3290 | Hypothetical protein. | Putative DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing [...] | 0.874 |
AMIS_3670 | AMIS_47750 | AMIS_3670 | AMIS_47750 | Putative ATP-dependent DNA helicase. | Putative 5'-3' exonuclease. | 0.860 |
AMIS_3670 | AMIS_76790 | AMIS_3670 | AMIS_76790 | Putative ATP-dependent DNA helicase. | Putative ATP-dependent helicase. | 0.982 |
AMIS_47750 | AMIS_3400 | AMIS_47750 | AMIS_3400 | Putative 5'-3' exonuclease. | Hypothetical protein. | 0.899 |
AMIS_47750 | AMIS_3670 | AMIS_47750 | AMIS_3670 | Putative 5'-3' exonuclease. | Putative ATP-dependent DNA helicase. | 0.860 |
AMIS_47750 | AMIS_73340 | AMIS_47750 | AMIS_73340 | Putative 5'-3' exonuclease. | Putative ATP-dependent DNA helicase. | 0.982 |
AMIS_47750 | AMIS_73580 | AMIS_47750 | AMIS_73580 | Putative 5'-3' exonuclease. | Putative MerR-family transcriptional regulator. | 0.956 |
AMIS_47750 | AMIS_76790 | AMIS_47750 | AMIS_76790 | Putative 5'-3' exonuclease. | Putative ATP-dependent helicase. | 0.873 |
AMIS_47750 | AMIS_78670 | AMIS_47750 | AMIS_78670 | Putative 5'-3' exonuclease. | Hypothetical protein; PHP domain. | 0.882 |
AMIS_47750 | dnaN | AMIS_47750 | AMIS_20 | Putative 5'-3' exonuclease. | Putative DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initi [...] | 0.955 |
AMIS_47750 | recA | AMIS_47750 | AMIS_69110 | Putative 5'-3' exonuclease. | Putative recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.930 |
AMIS_47750 | sbcD | AMIS_47750 | AMIS_67930 | Putative 5'-3' exonuclease. | Putative ATP-dependent dsDNA exonuclease D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.899 |
AMIS_47750 | topA | AMIS_47750 | AMIS_3290 | Putative 5'-3' exonuclease. | Putative DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing [...] | 0.860 |
AMIS_73340 | AMIS_3400 | AMIS_73340 | AMIS_3400 | Putative ATP-dependent DNA helicase. | Hypothetical protein. | 0.966 |
AMIS_73340 | AMIS_47750 | AMIS_73340 | AMIS_47750 | Putative ATP-dependent DNA helicase. | Putative 5'-3' exonuclease. | 0.982 |
AMIS_73340 | AMIS_73580 | AMIS_73340 | AMIS_73580 | Putative ATP-dependent DNA helicase. | Putative MerR-family transcriptional regulator. | 0.969 |
page 1 of 4