STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMIS_4880Hypothetical protein; Radical SAM superfamily. (335 aa)    
Predicted Functional Partners:
AMIS_49720
Hypothetical protein; Condensation domain of NRPS.
  
  
 0.735
AMIS_32320
Putative NRPS.
  
  
 0.733
AMIS_49650
Putative NRPS.
  
  
 0.685
AMIS_32330
Putative NRPS.
  
  
 0.675
AMIS_27230
Hypothetical protein.
 
  
 0.536
AMIS_4890
Putative rhamnogalacturonase B.
       0.535
AMIS_25540
Hypothetical protein; Radical SAM superfamily.
 
  
 0.495
AMIS_75800
Putative uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase.
 
  
 0.478
AMIS_58770
Putative NRPS-type-I PKS fusion protein.
  
  
 0.450
AMIS_49680
Hypothetical protein.
 
  
 0.447
Your Current Organism:
Actinoplanes missouriensis
NCBI taxonomy Id: 512565
Other names: A. missouriensis 431, Actinoplanes missouriensis 431, Actinoplanes missouriensis str. 431, Actinoplanes missouriensis strain 431
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.