Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMIS_490Hypothetical protein. (90 aa)    
Predicted Functional Partners:
AMIS_500
Putative sortase family protein.
 
   
 0.948
AMIS_480
Putative glutamine amidotransferase.
       0.892
AMIS_510
Hypothetical protein.
       0.836
crgA
Putative WhiP protein; Involved in cell division; Belongs to the CrgA family.
       0.614
AMIS_18410
Hypothetical protein.
  
     0.537
AMIS_11840
Hypothetical protein.
  
     0.526
AMIS_76950
Hypothetical protein.
  
     0.499
AMIS_62190
Putative DNA-binding protein; BldD homologue.
  
     0.488
AMIS_15390
Hypothetical protein.
  
     0.465
AMIS_14470
Hypothetical protein.
  
     0.460
Your Current Organism:
Actinoplanes missouriensis
NCBI taxonomy Id: 512565
Other names: A. missouriensis 431, Actinoplanes missouriensis 431, Actinoplanes missouriensis str. 431, Actinoplanes missouriensis strain 431
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