STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMIS_51220Glycosyl hydrolase family 48, Cellulose binding domain. (962 aa)    
Predicted Functional Partners:
AMIS_51210
Putative cellulose/chitin-binding protein; Cellulose binding domain, Chitin binding domain.
 
    
0.844
AMIS_32650
Putative chitin-binding protein.
  
     0.711
AMIS_48350
Glycosyl hydrolase family 9, Carbohydrate binding domain.
  
   
 0.678
AMIS_28290
Putative xylanase; Glycosyl hydrolase family 10, Cellulose binding domain.
 
   
 0.660
AMIS_66310
Hypothetical protein; Carbohydrate binding module.
 
   
 0.653
AMIS_28300
Ricin-type beta-trefoil lectin domain.
 
   0.632
AMIS_19380
Hypothetical protein; Carbohydrate binding domain?.
 
   
 0.626
AMIS_32500
Putative xylanase; Glycosyl hydrolase family 10, Ricin-type beta-trefoil lectin domain.
 
   
 0.625
AMIS_58590
Putative pectate lyase.
  
   
 0.618
AMIS_72550
Glycosyl hydrolase family 16, Carbohydrate binding module (family 6).
 
   
 0.610
Your Current Organism:
Actinoplanes missouriensis
NCBI taxonomy Id: 512565
Other names: A. missouriensis 431, Actinoplanes missouriensis 431, Actinoplanes missouriensis str. 431, Actinoplanes missouriensis strain 431
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